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 <front>
  <journal-meta>
   <journal-id journal-id-type="publisher-id">Russian Journal of Biological Physics and Chemisrty</journal-id>
   <journal-title-group>
    <journal-title xml:lang="en">Russian Journal of Biological Physics and Chemisrty</journal-title>
    <trans-title-group xml:lang="ru">
     <trans-title>АКТУАЛЬНЫЕ ВОПРОСЫ БИОЛОГИЧЕСКОЙ ФИЗИКИ И ХИМИИ</trans-title>
    </trans-title-group>
   </journal-title-group>
   <issn publication-format="print">2499-9962</issn>
  </journal-meta>
  <article-meta>
   <article-id pub-id-type="publisher-id">54391</article-id>
   <article-categories>
    <subj-group subj-group-type="toc-heading" xml:lang="ru">
     <subject>Общая биофизика</subject>
    </subj-group>
    <subj-group subj-group-type="toc-heading" xml:lang="en">
     <subject>General biophysics</subject>
    </subj-group>
    <subj-group>
     <subject>Общая биофизика</subject>
    </subj-group>
   </article-categories>
   <title-group>
    <article-title xml:lang="en">ASSESSMENT OF BIOLOGICALLY ACTIVE CONFORMATIONS OF DELTORPHINS AND CONSTRUCTION OF PHARMACOPHORE MODELS FOR THEIR INTERACTIONS WITH δ-RECEPTORS</article-title>
    <trans-title-group xml:lang="ru">
     <trans-title>ОЦЕНКА БИОЛОГИЧЕСКИ АКТИВНОЙ КОНФОРМАЦИИ ДЕЛЬТОРФИНОВ И ПОСТРОЕНИЕ ФАРМАКОФОРНОЙ МОДЕЛИ ДЛЯ ИХ ВЗАИМОДЕЙСТВИЯ С δ-РЕЦЕПТОРАМИ</trans-title>
    </trans-title-group>
   </title-group>
   <contrib-group content-type="authors">
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Ахвердиева</surname>
       <given-names>Г А</given-names>
      </name>
      <name xml:lang="en">
       <surname>Akverdieva</surname>
       <given-names>G A</given-names>
      </name>
     </name-alternatives>
     <email>hagverdigulnara@gmail.com</email>
     <xref ref-type="aff" rid="aff-1"/>
    </contrib>
   </contrib-group>
   <aff-alternatives id="aff-1">
    <aff>
     <institution xml:lang="ru">Бакинский государственный университет, Институт физических проблем</institution>
     <country>ru</country>
    </aff>
    <aff>
     <institution xml:lang="en">Institute for Physical Problems, Baku State University</institution>
     <country>ru</country>
    </aff>
   </aff-alternatives>
   <pub-date publication-format="print" date-type="pub" iso-8601-date="2019-03-25T20:22:29+03:00">
    <day>25</day>
    <month>03</month>
    <year>2019</year>
   </pub-date>
   <pub-date publication-format="electronic" date-type="pub" iso-8601-date="2019-03-25T20:22:29+03:00">
    <day>25</day>
    <month>03</month>
    <year>2019</year>
   </pub-date>
   <volume>4</volume>
   <issue>1</issue>
   <fpage>22</fpage>
   <lpage>31</lpage>
   <history>
    <date date-type="received" iso-8601-date="2019-03-20T20:22:29+03:00">
     <day>20</day>
     <month>03</month>
     <year>2019</year>
    </date>
    <date date-type="accepted" iso-8601-date="2019-03-20T20:22:29+03:00">
     <day>20</day>
     <month>03</month>
     <year>2019</year>
    </date>
   </history>
   <self-uri xlink:href="https://rusjbpc.ru/en/nauka/article/54391/view">https://rusjbpc.ru/en/nauka/article/54391/view</self-uri>
   <abstract xml:lang="ru">
    <p>В работе методами молекулярной механики, молекулярной динамики и квантовой химии с применением современных компьютерных программ исследованы конформационно-электронные аспекты, важные для функционирования дельторфина I и дельторфина II. Установлено, что стабильность пространственной структуры исследованных пептидов определяется взаимным расположением фармакофорных элементов: α-аминогруппы, фенольного кольца остатка Tyr1, ароматического кольца остатка Phe3, отрицательно заряженных групп остатков Asp/Glu и характеризуется специфическим распределением электронной плотности, что играет важную роль при взаимодействии с рецептором. На основе полученных результатов и данных структурно-функциональных отношений оценены биологически активные конформации дельторфинов и построена модель фармакофора для их связывания с δ-рецепторами. Показано, что биологически активные конформации этих молекул характеризуются полусвернутой формой основной цепи: в них С-концевой участок Val-Val-Gly-NH2, имеющий вытянутую конформацию, благодаря обратному повороту на остатке Val5 сближен в пространстве с N-концевым спиральным участком Tyr-D-Ala-Phe-Asp/Glu, что придает этим молекулам компактность. Можно предположить, что за анальгетическое действие дельторфинов ответственны стерически вероятные пространственные структуры их N-концевого физиологически активного тетрапептидного фрагмента, стабилизирующиеся солевыми мостиками между протонированным атомом азота и атомами кислорода боковых цепей отрицательно заряженных остатков Asp/Glu, а связывание с рецепторами осуществляется формированием водородных связей с участием ионизируемых функциональных групп.</p>
   </abstract>
   <trans-abstract xml:lang="en">
    <p>In the work the conformational-electronic aspects important for the functional activity of deltorphin I and deltorphin II are investigated by the methods of molecular mechanics, molecular dynamics and quantum chemistry using modern computer programs. It was established that the stability of the spatial structure of deltorphins is determined by the mutual arrangement of the pharmacophore elements: α-amino group, phenolic ring of Tyr1 residue, aromatic ring of Phe3 residue, negatively charged Asp/Glu residue groups and characterized by a specific distribution of electron density, which plays an important role in the interaction with receptor. Based on the obtained results and data of structure-function relationships, the biologically active conformations of deltorphins were assessed and a pharmacophore model was constructed for their binding to δ- receptors. It is shown that the biologically active conformations of these molecules are characterized by a semi-folded form of the main chain: in them the C-terminal fragment Val-Val-Gly-NH2, which has an elongated conformation, due to reverse turn on the Val5 residue in space is close to the N-terminal helical fragment Tyr-D -Ala-Phe-Asp/Glu, that makes these molecules compact. It can be assumed that for the analgesic action of deltorphins the sterically probable spatial structures of their N-terminal physiologically active tetrapeptide fragment which are stabilized by salt bridges between the protonated nitrogen atom and the oxygen atoms of the side chains of negatively charged Asp/Glu residues are responsible, while binding to the receptors is formed by the formation of hydrogen bonds with involving ionizable functional groups.</p>
   </trans-abstract>
   <kwd-group xml:lang="ru">
    <kwd>дельторфины</kwd>
    <kwd>биологически активная конформация</kwd>
    <kwd>фармакофорная модель</kwd>
    <kwd>методы компьютерного моделирования</kwd>
   </kwd-group>
   <kwd-group xml:lang="en">
    <kwd>deltorphins</kwd>
    <kwd>biologically active conformation</kwd>
    <kwd>pharmacophore model</kwd>
    <kwd>computer modelling methods</kwd>
   </kwd-group>
  </article-meta>
 </front>
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  <p></p>
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