<!DOCTYPE article
PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.4 20190208//EN"
       "JATS-journalpublishing1.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="research-article" dtd-version="1.4" xml:lang="en">
 <front>
  <journal-meta>
   <journal-id journal-id-type="publisher-id">Russian Journal of Biological Physics and Chemisrty</journal-id>
   <journal-title-group>
    <journal-title xml:lang="en">Russian Journal of Biological Physics and Chemisrty</journal-title>
    <trans-title-group xml:lang="ru">
     <trans-title>АКТУАЛЬНЫЕ ВОПРОСЫ БИОЛОГИЧЕСКОЙ ФИЗИКИ И ХИМИИ</trans-title>
    </trans-title-group>
   </journal-title-group>
   <issn publication-format="print">2499-9962</issn>
  </journal-meta>
  <article-meta>
   <article-id pub-id-type="publisher-id">83365</article-id>
   <article-id pub-id-type="doi">10.29039/rusjbpc.2023.0622</article-id>
   <article-categories>
    <subj-group subj-group-type="toc-heading" xml:lang="ru">
     <subject>МОДЕЛИРОВАНИЕ В БИОФИЗИКЕ И БИОИНФОРМАТИКА</subject>
    </subj-group>
    <subj-group subj-group-type="toc-heading" xml:lang="en">
     <subject>MODELLING IN BIOPHYCIS AND BIOINFORMATISC</subject>
    </subj-group>
    <subj-group>
     <subject>МОДЕЛИРОВАНИЕ В БИОФИЗИКЕ И БИОИНФОРМАТИКА</subject>
    </subj-group>
   </article-categories>
   <title-group>
    <article-title xml:lang="en">EMPLOYING THE OPTICAL MODEL OF AN &quot;OBLATE SPHEROID&quot; TO APPROXIMATE THE SHAPE OF AN ACTIVATED PLATELET</article-title>
    <trans-title-group xml:lang="ru">
     <trans-title>ИСПОЛЬЗОВАНИЕМ ОПТИЧЕСКОЙ МОДЕЛИ «СПЛЮСНУТЫЙ СФЕРОИД» ДЛЯ ПРИБЛИЖЕНИЯ ФОРМЫ АКТИВИРОВАННОГО ТРОМБОЦИТА</trans-title>
    </trans-title-group>
   </title-group>
   <contrib-group content-type="authors">
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Литвиненко</surname>
       <given-names>А. Л.</given-names>
      </name>
      <name xml:lang="en">
       <surname>Litvinenko</surname>
       <given-names>A. L.</given-names>
      </name>
     </name-alternatives>
     <email>roseline.neolis@gmail.com</email>
     <xref ref-type="aff" rid="aff-1"/>
    </contrib>
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Некрасов</surname>
       <given-names>В. М.</given-names>
      </name>
      <name xml:lang="en">
       <surname>Nekrasov</surname>
       <given-names>V. M.</given-names>
      </name>
     </name-alternatives>
     <xref ref-type="aff" rid="aff-2"/>
    </contrib>
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Ястребова</surname>
       <given-names>Е. С.</given-names>
      </name>
      <name xml:lang="en">
       <surname>Yastrebova</surname>
       <given-names>E. S.</given-names>
      </name>
     </name-alternatives>
     <email>kat30cer@kinetics.nsc.ru</email>
     <xref ref-type="aff" rid="aff-3"/>
    </contrib>
   </contrib-group>
   <aff-alternatives id="aff-1">
    <aff>
     <institution xml:lang="ru">Институт химической кинетики и горения им. В.В. Воеводского</institution>
     <city>Новосибирск</city>
     <country>Россия</country>
    </aff>
    <aff>
     <institution xml:lang="en">Voevodsky Institute of Chemical Kinetics and Combustion</institution>
     <city>Novosibirsk</city>
     <country>Russian Federation</country>
    </aff>
   </aff-alternatives>
   <aff-alternatives id="aff-2">
    <aff>
     <institution xml:lang="ru">Институт химической кинетики и горения им. В.В. Воеводского</institution>
     <city>Новосибирск</city>
     <country>Россия</country>
    </aff>
    <aff>
     <institution xml:lang="en">Voevodsky Institute of Chemical Kinetics and Combustion</institution>
     <city>Novosibirsk</city>
     <country>Russian Federation</country>
    </aff>
   </aff-alternatives>
   <aff-alternatives id="aff-3">
    <aff>
     <institution xml:lang="ru">Институт химической кинетики и горения им. В.В. Воеводского</institution>
     <city>Новосибирск</city>
     <country>Россия</country>
    </aff>
    <aff>
     <institution xml:lang="en">Voevodsky Institute of Chemical Kinetics and Combustion</institution>
     <city>Novosibirsk</city>
     <country>Russian Federation</country>
    </aff>
   </aff-alternatives>
   <pub-date publication-format="print" date-type="pub" iso-8601-date="2024-05-27T09:21:53+03:00">
    <day>27</day>
    <month>05</month>
    <year>2024</year>
   </pub-date>
   <pub-date publication-format="electronic" date-type="pub" iso-8601-date="2024-05-27T09:21:53+03:00">
    <day>27</day>
    <month>05</month>
    <year>2024</year>
   </pub-date>
   <volume>8</volume>
   <issue>3</issue>
   <fpage>282</fpage>
   <lpage>278</lpage>
   <history>
    <date date-type="received" iso-8601-date="2023-07-20T00:00:00+03:00">
     <day>20</day>
     <month>07</month>
     <year>2023</year>
    </date>
   </history>
   <self-uri xlink:href="https://rusjbpc.ru/en/nauka/article/83365/view">https://rusjbpc.ru/en/nauka/article/83365/view</self-uri>
   <abstract xml:lang="ru">
    <p>Определение морфологических параметров одиночных тромбоцитов вызывает не только научный, но и практический интерес для медицинских приложений. Однако корректность определения морфологических параметров тромбоцитов по данным светорассеяния зависит не только от качества исходных экспериментальных данных или применяемого метода решения обратной задачи светорассеяния, но и от используемой оптической модели тромбоцита, в рамках которой ищется оптимальное решение. Явное несоответствие оптической модели и реальной формы измеренной частицы может приводит к неконтролируемым систематическим ошибкам определяемых параметров, что отрицательным образом сказывается на адекватности и корректности выводов проведённого исследования. В данной работе приведены оценки влияния погрешностей такого рода на значения параметров формы для двух частных примеров геометрических форм тромбоцитов. Эти формы заведомо отличались от используемой базовой оптической модели, взятой в виде однородных сплюснутых сфероидов. Первая тестируемая геометрическая форма была основана на биофизической модели поверхности тромбоцита, получаемая при оптимизации площади поверхности с фиксированным внутренним объемом, натянутой на математическую кривую с постоянной кривизной, а вторая геометрическая форма была создана искусственно, на основе сплюснутого сфероида с добавленными вытянутыми половинками эллипсоидов, имитирующих псевдоподии. В качестве экспериментальных данных были взяты численно рассчитанные сигналы светорассеяния с помощью программного пакета ADDA, которые были потом адаптированы к виду сигналов, получаемых при измерениях сигналов светорассеяния на сканирующем проточном цитометре.</p>
   </abstract>
   <trans-abstract xml:lang="en">
    <p>The determination of morphological parameters of individual platelets is of great scientific and practical interest in the field of medical applications. However, the accuracy of determining these parameters based on light scattering data depends not only on the quality of the initial experimental data and the methodology used to solve the inverse problem of light scattering, but also on the optical model employed for platelets. The choice of an appropriate optical model is crucial as it directly influences the accuracy of the determined parameters. A significant mismatch between the assumed optical model and the actual shape of the measured particle can introduce uncontrolled systematic errors, thereby compromising the adequacy and validity of the study's findings. This paper focuses on assessing the impact of such errors on the shape parameters using two specific examples of platelet geometric shapes. These shapes were deliberately chosen to deviate from the commonly employed optical model, which assumes uniform oblate spheroids. The first geometric configuration investigated was derived from a biophysical model that represents the morphology of a platelet. This model was obtained through the optimization of surface area while keeping the internal volume constant. The surface was defined by a mathematical curve characterized by a consistent curvature. The second geometric structure was artificially constructed by augmenting an oblate spheroid with elongated halves of ellipsoids, specifically designed to imitate pseudopodia.Numerically calculated light scattering signals obtained through the ADDA software package were used as experimental data, and these signals were subsequently adjusted to resemble the type of signals obtained from light scattering measurements conducted on a scanning flow cytometer.</p>
   </trans-abstract>
   <kwd-group xml:lang="ru">
    <kwd>тромбоциты</kwd>
    <kwd>оптическая модель</kwd>
    <kwd>обратная задача светорассеяния</kwd>
   </kwd-group>
   <kwd-group xml:lang="en">
    <kwd>platelets</kwd>
    <kwd>optical model</kwd>
    <kwd>scanning flow cytometry</kwd>
   </kwd-group>
  </article-meta>
 </front>
 <body>
  <p></p>
 </body>
 <back>
  <ref-list>
   <ref id="B1">
    <label>1.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">Frojmovic M.M., Panjwani R. Geometry of normal mammalian platelets by quantitative microscopic studies. Biophys J., 1976, vol. 16, no. 9, pp. 1071-1089, doi: 10.1016/S0006-3495(76)85756-6.</mixed-citation>
     <mixed-citation xml:lang="en">Frojmovic M.M., Panjwani R. Geometry of normal mammalian platelets by quantitative microscopic studies. Biophys J., 1976, vol. 16, no. 9, pp. 1071-1089, doi: 10.1016/S0006-3495(76)85756-6.</mixed-citation>
    </citation-alternatives>
   </ref>
   <ref id="B2">
    <label>2.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">Chesnutt J.K.W., Han H.-C. Platelet size and density affect shear-induced thrombus formation in tortuous arterioles. Phys Biol., 2013, vol. 10, no. 5, doi: 10.1088/1478-3975/10/5/056003.</mixed-citation>
     <mixed-citation xml:lang="en">Chesnutt J.K.W., Han H.-C. Platelet size and density affect shear-induced thrombus formation in tortuous arterioles. Phys Biol., 2013, vol. 10, no. 5, doi: 10.1088/1478-3975/10/5/056003.</mixed-citation>
    </citation-alternatives>
   </ref>
   <ref id="B3">
    <label>3.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">Litvinenko A.L., Moskalensky A.E., Karmadonova N.A., Nekrasov V.M., Strokotov D.I., Konokhova A.I., Yurkin M.A., Pokushalov E.A., Chernyshev V.A., Maltsev V.P. Fluorescence-free flow cytometry for measurement of shape index distribution of resting, partially activated, and fully activated platelets. Cytometry, 2016, vol. 89, no. 11, pp. 1010-1016, doi: 10.1002/cyto.a.23003.</mixed-citation>
     <mixed-citation xml:lang="en">Litvinenko A.L., Moskalensky A.E., Karmadonova N.A., Nekrasov V.M., Strokotov D.I., Konokhova A.I., Yurkin M.A., Pokushalov E.A., Chernyshev V.A., Maltsev V.P. Fluorescence-free flow cytometry for measurement of shape index distribution of resting, partially activated, and fully activated platelets. Cytometry, 2016, vol. 89, no. 11, pp. 1010-1016, doi: 10.1002/cyto.a.23003.</mixed-citation>
    </citation-alternatives>
   </ref>
   <ref id="B4">
    <label>4.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">Hartwig J.H. Chapter 8 - The Platelet Cytoskeleton. Platelets (Third Edition) ed. Michelson A.D.  Academic Press,  2013,  pp. 145-168,  doi:  10.1016/B978-0-12-387837-3.00008-0.</mixed-citation>
     <mixed-citation xml:lang="en">Hartwig J.H. Chapter 8 - The Platelet Cytoskeleton. Platelets (Third Edition) ed. Michelson A.D.  Academic Press,  2013,  pp. 145-168,    doi:  10.1016/B978-0-12-387837-3.00008-0.</mixed-citation>
    </citation-alternatives>
   </ref>
   <ref id="B5">
    <label>5.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">Patel-Hett S., Richardson J.L. et al.Visualization of microtubule growth in living platelets reveals a dynamic marginal band with multiple microtubules. Blood, 2008, vol. 111, no. 9, pp. 4605-4616, doi: 10.1182/blood-2007-10-118844.</mixed-citation>
     <mixed-citation xml:lang="en">Patel-Hett S., Richardson J.L. et al.Visualization of microtubule growth in living platelets reveals a dynamic marginal band with multiple microtubules. Blood, 2008, vol. 111, no. 9, pp. 4605-4616, doi: 10.1182/blood-2007-10-118844.</mixed-citation>
    </citation-alternatives>
   </ref>
   <ref id="B6">
    <label>6.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">White J.G., Rao G.H. Microtubule coils versus the surface membrane cytoskeleton in maintenance and restoration of platelet discoid shape. Am. J. Pathol., 1998, vol. 152, no. 2, pp. 597-609.</mixed-citation>
     <mixed-citation xml:lang="en">White J.G., Rao G.H. Microtubule coils versus the surface membrane cytoskeleton in maintenance and restoration of platelet discoid shape. Am. J. Pathol., 1998, vol. 152, no. 2, pp. 597-609.</mixed-citation>
    </citation-alternatives>
   </ref>
   <ref id="B7">
    <label>7.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">Moskalensky A.E., Yurkin M.A., Muliukov A.R., Litvinenko A.L., Nekrasov V.M., Chernyshev A.V., Maltsev V.P. Method for the simulation of blood platelet shape and its evolution during activation. PLOS Computational Biology, 2018, vol. 14, no. 3, e1005899, doi: 10.1371/journal.pcbi.1005899.</mixed-citation>
     <mixed-citation xml:lang="en">Moskalensky A.E., Yurkin M.A., Muliukov A.R., Litvinenko A.L., Nekrasov V.M., Chernyshev A.V., Maltsev V.P. Method for the simulation of blood platelet shape and its evolution during activation. PLOS Computational Biology, 2018, vol. 14, no. 3, e1005899, doi: 10.1371/journal.pcbi.1005899.</mixed-citation>
    </citation-alternatives>
   </ref>
   <ref id="B8">
    <label>8.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">Steiner M., Ikeda Y. Quantitative assessment of polymerized and depolymerized platelet microtubules. J. Clin. Invest., 1979, vol. 63, no. 3, 443-448, doi: 10.1172/JCI109321.</mixed-citation>
     <mixed-citation xml:lang="en">Steiner M., Ikeda Y. Quantitative assessment of polymerized and depolymerized platelet microtubules. J. Clin. Invest., 1979, vol. 63, no. 3, 443-448, doi: 10.1172/JCI109321.</mixed-citation>
    </citation-alternatives>
   </ref>
   <ref id="B9">
    <label>9.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">Hartwig J.H. Mechanisms of actin rearrangements mediating platelet activation. Journal of Cell Biology, 1992, vol. 118, no. 6, pp. 1421-1442, doi: 10.1083/jcb.118.6.1421.</mixed-citation>
     <mixed-citation xml:lang="en">Hartwig J.H. Mechanisms of actin rearrangements mediating platelet activation. Journal of Cell Biology, 1992, vol. 118, no. 6, pp. 1421-1442, doi: 10.1083/jcb.118.6.1421.</mixed-citation>
    </citation-alternatives>
   </ref>
   <ref id="B10">
    <label>10.</label>
    <citation-alternatives>
     <mixed-citation xml:lang="ru">Team of core ADDA developers [Electronic resource] GitHub.</mixed-citation>
     <mixed-citation xml:lang="en">Team of core ADDA developers [Electronic resource] GitHub.</mixed-citation>
    </citation-alternatives>
   </ref>
  </ref-list>
 </back>
</article>
