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 <front>
  <journal-meta>
   <journal-id journal-id-type="publisher-id">Russian Journal of Biological Physics and Chemisrty</journal-id>
   <journal-title-group>
    <journal-title xml:lang="en">Russian Journal of Biological Physics and Chemisrty</journal-title>
    <trans-title-group xml:lang="ru">
     <trans-title>АКТУАЛЬНЫЕ ВОПРОСЫ БИОЛОГИЧЕСКОЙ ФИЗИКИ И ХИМИИ</trans-title>
    </trans-title-group>
   </journal-title-group>
   <issn publication-format="print">2499-9962</issn>
  </journal-meta>
  <article-meta>
   <article-id pub-id-type="publisher-id">54423</article-id>
   <article-categories>
    <subj-group subj-group-type="toc-heading" xml:lang="ru">
     <subject>Моделирование в биофизике</subject>
    </subj-group>
    <subj-group subj-group-type="toc-heading" xml:lang="en">
     <subject>Modelling in biophycis</subject>
    </subj-group>
    <subj-group>
     <subject>Моделирование в биофизике</subject>
    </subj-group>
   </article-categories>
   <title-group>
    <article-title xml:lang="en">CONFORMATION CHANGE AND MECHANICAL ACTIVATION OF VON WILLEBRAND FACTOR PROTEIN IN A SHEAR FLOW OF VISCOUS FLUID STUDIED BY COMPUTER SIMULATIONS</article-title>
    <trans-title-group xml:lang="ru">
     <trans-title>КОМПЬЮТЕРНОЕ МОДЕЛИРОВАНИЕ КОНФОРМАЦИОННЫХ ИЗМЕНЕНИЙ И МЕХАНИЧЕСКОЙ АКТИВАЦИИ ФАКТОРА ФОН ВИЛЛЕБРАНДА В СДВИГОВОМ ПОТОКЕ ВЯЗКОЙ ЖИДКОСТИ</trans-title>
    </trans-title-group>
   </title-group>
   <contrib-group content-type="authors">
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Кущенко</surname>
       <given-names>Ю К</given-names>
      </name>
      <name xml:lang="en">
       <surname>Kushchenko</surname>
       <given-names>Yu K</given-names>
      </name>
     </name-alternatives>
     <xref ref-type="aff" rid="aff-1"/>
    </contrib>
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Беляев</surname>
       <given-names>А В</given-names>
      </name>
      <name xml:lang="en">
       <surname>Belyaev</surname>
       <given-names>A V</given-names>
      </name>
     </name-alternatives>
     <email>al_belyaev@inbox.ru</email>
     <xref ref-type="aff" rid="aff-2"/>
    </contrib>
   </contrib-group>
   <aff-alternatives id="aff-1">
    <aff>
     <institution xml:lang="ru">Московский государственный университет им. М.В. Ломоносова</institution>
     <country>ru</country>
    </aff>
    <aff>
     <institution xml:lang="en">Lomonosov Moscow State University</institution>
     <country>ru</country>
    </aff>
   </aff-alternatives>
   <aff-alternatives id="aff-2">
    <aff>
     <institution xml:lang="ru">Московский государственный университет им. М.В. Ломоносова</institution>
     <country>ru</country>
    </aff>
    <aff>
     <institution xml:lang="en">Lomonosov Moscow State University</institution>
     <country>ru</country>
    </aff>
   </aff-alternatives>
   <pub-date publication-format="print" date-type="pub" iso-8601-date="2019-06-25T20:22:29+03:00">
    <day>25</day>
    <month>06</month>
    <year>2019</year>
   </pub-date>
   <pub-date publication-format="electronic" date-type="pub" iso-8601-date="2019-06-25T20:22:29+03:00">
    <day>25</day>
    <month>06</month>
    <year>2019</year>
   </pub-date>
   <volume>4</volume>
   <issue>2</issue>
   <fpage>220</fpage>
   <lpage>225</lpage>
   <history>
    <date date-type="received" iso-8601-date="2019-06-20T20:22:29+03:00">
     <day>20</day>
     <month>06</month>
     <year>2019</year>
    </date>
    <date date-type="accepted" iso-8601-date="2019-06-20T20:22:29+03:00">
     <day>20</day>
     <month>06</month>
     <year>2019</year>
    </date>
   </history>
   <self-uri xlink:href="https://rusjbpc.ru/en/nauka/article/54423/view">https://rusjbpc.ru/en/nauka/article/54423/view</self-uri>
   <abstract xml:lang="ru">
    <p>На начальной стадии гемостаза или тромбоза тромбоциты крови прикрепляются к месту повреждению и иммобилизируются на поверхности сосудов. Эта начальная агрегация тромбоцитов обеспечивает основу для дальнейших биохимических реакций, упрочнения тромба и остановки кровотечения. Поэтому детальное изучение первых стадий адгезии и агрегации тромбоцитов представляет собой актуальную задачу. Механизм первичной адгезии тромбоцитов в артериальных условиях, основан, главным образом, на специфическом взаимодействии «ключ-замок» между трансмембранным гликопротеином GPIb на поверхности тромбоцитов и белком плазмы крови - фактором фон Виллебранда (ФВ), - который обеспечивает адгезию тромбоцитов к травме в артериях и микрососудах. В настоящей работе представлена трехмерная компьютерная модель, которая позволяет явно описывать динамику, конформационные изменения и активацию ФВ гидродинамическими силами. Модель основана на сочетании метода решеточных уравнений Больцмана с флуктауциями для моделирования гидродинамики и крупно-зернистой модели динамики частиц для описания динамики полимерной цепочки в вязкой жидкости. Модель была верифицирована путем сравнения результатов расчетов с экспериментальными данными, найденными в литературе. Численные результаты показывают, что контурная длина мультимера ключевым параметром, регулирующим тромбогенность ФВ в крови. Также модель показала, что прикрепление к поверхности способствует активации ФВ и адгезии тромбоцитов. Полученные результаты могут быть использованы при многомасштабном компьютерном моделировании роста тромба в кровеносных сосудах.</p>
   </abstract>
   <trans-abstract xml:lang="en">
    <p>At the initial stage of hemostasis or thrombosis, blood platelets attach to the injury and become immobilized on vascular surface. This initial platelet aggregation provides the basis for biochemical reactions, hardening of the blood clot and cessation of bleeding. Therefore, a detailed study of the first stages of adhesion and platelet aggregation is an urgent task. The mechanism of primary platelet adhesion in arterial hydrodynamic conditions is based mainly on the specific key-lock interactions between the transmembrane platelet glycoprotein GPIb and the plasma protein von Willebrand factor. The von Willebrand factor (VWF) is a multimeric plasma protein that provides platelet adhesion to injury in the arteries and microvessels. This paper presents a three-dimensional computer model that allows one to explicitly describe the dynamics, conformational changes, and activation of VWF by hydrodynamic forces. The model is based on the combination of the Boltzmann lattice method with fluctuations to simulate hydrodynamics and a coarse-grained particle dynamics model for describing the dynamics of a polymer chain in a viscous fluid. The model was verified by comparing the results of calculations with experimental data found in the literature. Numerical results show that the contour length of the multimer is an important parameter regulating the thrombogenicity of VWF in the blood. The model also showed that attachment to the surface contributes to the activation of VWF and platelet adhesion. The results can be used in a multiscale computer simulation of the growth of blood clots in blood vessels.</p>
   </trans-abstract>
   <kwd-group xml:lang="ru">
    <kwd>фактор фон Виллебранда</kwd>
    <kwd>тромбоз</kwd>
    <kwd>гемостаз</kwd>
    <kwd>гидродинамическая активация</kwd>
    <kwd>механохимическая регуляция</kwd>
    <kwd>компьютерное моделирование</kwd>
   </kwd-group>
   <kwd-group xml:lang="en">
    <kwd>von Willebrand factor</kwd>
    <kwd>thrombosis</kwd>
    <kwd>hemostasis</kwd>
    <kwd>hydrodynamic activation</kwd>
    <kwd>mechano-chemical regulation</kwd>
    <kwd>computer simulations</kwd>
   </kwd-group>
  </article-meta>
 </front>
 <body>
  <p></p>
 </body>
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