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 <front>
  <journal-meta>
   <journal-id journal-id-type="publisher-id">Russian Journal of Biological Physics and Chemisrty</journal-id>
   <journal-title-group>
    <journal-title xml:lang="en">Russian Journal of Biological Physics and Chemisrty</journal-title>
    <trans-title-group xml:lang="ru">
     <trans-title>АКТУАЛЬНЫЕ ВОПРОСЫ БИОЛОГИЧЕСКОЙ ФИЗИКИ И ХИМИИ</trans-title>
    </trans-title-group>
   </journal-title-group>
   <issn publication-format="print">2499-9962</issn>
  </journal-meta>
  <article-meta>
   <article-id pub-id-type="publisher-id">54669</article-id>
   <article-categories>
    <subj-group subj-group-type="toc-heading" xml:lang="ru">
     <subject>Моделирование в биофизике</subject>
    </subj-group>
    <subj-group subj-group-type="toc-heading" xml:lang="en">
     <subject>Modelling in biophycis</subject>
    </subj-group>
    <subj-group>
     <subject>Моделирование в биофизике</subject>
    </subj-group>
   </article-categories>
   <title-group>
    <article-title xml:lang="en">Influence of strongly binded water molecules on photoexcitation of thionine dye in solution: Quantum chemical analysis</article-title>
    <trans-title-group xml:lang="ru">
     <trans-title>Влияние сильно связанных молекул воды на фотовозбуждение красителя тионина в растворе: квантовохимический анализ</trans-title>
    </trans-title-group>
   </title-group>
   <contrib-group content-type="authors">
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Костюкова</surname>
       <given-names>Л О</given-names>
      </name>
      <name xml:lang="en">
       <surname>Kostjukova</surname>
       <given-names>L O</given-names>
      </name>
     </name-alternatives>
     <xref ref-type="aff" rid="aff-1"/>
    </contrib>
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Воронин</surname>
       <given-names>Д П</given-names>
      </name>
      <name xml:lang="en">
       <surname>Voronin</surname>
       <given-names>D P</given-names>
      </name>
     </name-alternatives>
     <xref ref-type="aff" rid="aff-2"/>
    </contrib>
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Рыбакова</surname>
       <given-names>К. А.</given-names>
      </name>
      <name xml:lang="en">
       <surname>Rybakova</surname>
       <given-names>K. A.</given-names>
      </name>
     </name-alternatives>
     <xref ref-type="aff" rid="aff-3"/>
    </contrib>
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Савченко</surname>
       <given-names>Е. В.</given-names>
      </name>
      <name xml:lang="en">
       <surname>Savchenko</surname>
       <given-names>E. V.</given-names>
      </name>
     </name-alternatives>
     <xref ref-type="aff" rid="aff-4"/>
    </contrib>
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Костюков</surname>
       <given-names>В. В.</given-names>
      </name>
      <name xml:lang="en">
       <surname>Kostjukov</surname>
       <given-names>V. V.</given-names>
      </name>
     </name-alternatives>
     <email>Viktor_Kostukov@mail.ru</email>
     <bio xml:lang="ru">
      <p>доктор физико-математических наук;</p>
     </bio>
     <bio xml:lang="en">
      <p>doctor of physical and mathematical sciences;</p>
     </bio>
     <xref ref-type="aff" rid="aff-5"/>
    </contrib>
   </contrib-group>
   <aff-alternatives id="aff-1">
    <aff>
     <institution xml:lang="ru">Черноморское высшее военно-морское училище им. П.С. Нахимова</institution>
     <country>ru</country>
    </aff>
    <aff>
     <institution xml:lang="en">Nakhimov Black Sea Higher Naval School</institution>
     <country>ru</country>
    </aff>
   </aff-alternatives>
   <aff-alternatives id="aff-2">
    <aff>
     <institution xml:lang="ru">Севастопольский государственный университет</institution>
     <country>ru</country>
    </aff>
    <aff>
     <institution xml:lang="en">Sevastopol State University</institution>
     <country>ru</country>
    </aff>
   </aff-alternatives>
   <aff-alternatives id="aff-3">
    <aff>
     <institution xml:lang="ru">Севастопольский государственный университет</institution>
     <city>Севастополь</city>
     <country>Россия</country>
    </aff>
    <aff>
     <institution xml:lang="en">Sevastopol State University</institution>
     <city>Sevastopol</city>
     <country>Russian Federation</country>
    </aff>
   </aff-alternatives>
   <aff-alternatives id="aff-4">
    <aff>
     <institution xml:lang="ru">Севастопольский государственный университет</institution>
     <city>Севастополь</city>
     <country>Россия</country>
    </aff>
    <aff>
     <institution xml:lang="en">Sevastopol State University</institution>
     <city>Sevastopol</city>
     <country>Russian Federation</country>
    </aff>
   </aff-alternatives>
   <aff-alternatives id="aff-5">
    <aff>
     <institution xml:lang="ru">Севастопольский государственный университет</institution>
     <city>Севастополь</city>
     <country>Россия</country>
    </aff>
    <aff>
     <institution xml:lang="en">Sevastopol State University</institution>
     <city>Sevastopol</city>
     <country>Russian Federation</country>
    </aff>
   </aff-alternatives>
   <pub-date publication-format="print" date-type="pub" iso-8601-date="2021-09-25T20:22:29+03:00">
    <day>25</day>
    <month>09</month>
    <year>2021</year>
   </pub-date>
   <pub-date publication-format="electronic" date-type="pub" iso-8601-date="2021-09-25T20:22:29+03:00">
    <day>25</day>
    <month>09</month>
    <year>2021</year>
   </pub-date>
   <volume>6</volume>
   <issue>3</issue>
   <fpage>424</fpage>
   <lpage>433</lpage>
   <history>
    <date date-type="received" iso-8601-date="2021-09-20T20:22:29+03:00">
     <day>20</day>
     <month>09</month>
     <year>2021</year>
    </date>
    <date date-type="accepted" iso-8601-date="2021-09-20T20:22:29+03:00">
     <day>20</day>
     <month>09</month>
     <year>2021</year>
    </date>
   </history>
   <self-uri xlink:href="https://rusjbpc.ru/en/nauka/article/54669/view">https://rusjbpc.ru/en/nauka/article/54669/view</self-uri>
   <abstract xml:lang="ru">
    <p>При помощи нестационарной теории функционала плотности (TD-DFT) на уровне X3LYP/6-31++G(d,p)/SMD вычислен вибронный спектр поглощения тиазинового красителя тионина (TH) в водном растворе. Данное исследование является логическим продолжением опубликованной ранее работы [L.O. Kostjukova et al. Optik 242 (2021) 167156], в которой водное окружение TH задавалось неявно в приближении сплошной среды при помощи модели SMD. В настоящей работе использовалось комбинированное задание водного окружения: явным образом описывались пять молекул воды, образующие сильные водородные связи с молекулой красителя; остальная водная среда задавалась неявно, также методом SMD. Данный подход применялся с целью выяснения влияния сайт-специфических взаимодействий с растворителем как на основное, так и на возбужденное состояние молекулы красителя, и на переход между ними (сольватохромизм). Представляло интерес также и обратное влияние возбуждения молекулы TH на ее ближайшую гидратную оболочку. Расчеты показали, что имеет место усиление этих Н-связей при фотовозбуждении красителя. При этом максимум вибронного спектра поглощения TH испытывает батохромный сдвиг на 14 нм. Данные результаты проанализированы с точки зрения сольватохромной теории. Построены граничные молекулярные орбитали, между которыми происходит электронный переход, карты распределения электронной плотности и электростатического потенциала основного и возбужденного состояний системы «TH+5H2O». Выполнен анализ фотоиндуцированной поляризации молекулы красителя.</p>
   </abstract>
   <trans-abstract xml:lang="en">
    <p>Using the time-dependent density functional theory at the X3LYP/6-31++G(d,p)/SMD level, the vibronic absorption spectrum of the thiazine dye thionine (TH) in an aqueous solution was calculated. This study is a logical continuation of the previously published work [L.O. Kostjukova et al. Optik 242 (2021) 167156], in which the water environment of TH was set implicitly in the continuum approximation using the SMD model. In the present work, we used a combined setting of the aqueous environment: five water molecules were explicitly described, forming strong hydrogen bonds with a dye molecule; the rest of the aqueous medium was set implicitly, also by the SMD method. This approach was used to elucidate the effect of site-specific interactions with a solvent on both the ground and excited states of the dye molecule and on the transition between them (solvatochromism). The reverse effect of excitation of the TH molecule on its nearest hydration shell was also of interest. Calculations have shown that there is an increase in these H-bonds upon photoexcitation of the dye. In this case, the maximum of the vibronic absorption spectrum of TH undergoes a bathochromic shift by 14 nm. These results were analyzed from the point of view of the solvatochromic theory. Frontier molecular orbitals, between which an electronic transition occurs, and maps of the distribution of electron density and electrostatic potential of the ground and excited states of the &quot;TH+5H2O&quot; system have been built. The photoinduced polarization of the dye molecule was analyzed.</p>
   </trans-abstract>
   <kwd-group xml:lang="ru">
    <kwd>тионин</kwd>
    <kwd>водный раствор</kwd>
    <kwd>возбужденное состояние</kwd>
    <kwd>вибронный спектр поглощения</kwd>
    <kwd>сольватохромизм</kwd>
    <kwd>водородная связь</kwd>
    <kwd>нестационарная теория функционала плотности</kwd>
   </kwd-group>
   <kwd-group xml:lang="en">
    <kwd>thionine</kwd>
    <kwd>aqueous solution</kwd>
    <kwd>excited state</kwd>
    <kwd>vibronic absorption spectrum</kwd>
    <kwd>solvatochromism</kwd>
    <kwd>hydrogen bond</kwd>
    <kwd>time-dependent density functional theory</kwd>
   </kwd-group>
  </article-meta>
 </front>
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