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 <front>
  <journal-meta>
   <journal-id journal-id-type="publisher-id">Russian Journal of Biological Physics and Chemisrty</journal-id>
   <journal-title-group>
    <journal-title xml:lang="en">Russian Journal of Biological Physics and Chemisrty</journal-title>
    <trans-title-group xml:lang="ru">
     <trans-title>АКТУАЛЬНЫЕ ВОПРОСЫ БИОЛОГИЧЕСКОЙ ФИЗИКИ И ХИМИИ</trans-title>
    </trans-title-group>
   </journal-title-group>
   <issn publication-format="print">2499-9962</issn>
  </journal-meta>
  <article-meta>
   <article-id pub-id-type="publisher-id">83368</article-id>
   <article-id pub-id-type="doi">10.29039/rusjbpc.2023.0625</article-id>
   <article-categories>
    <subj-group subj-group-type="toc-heading" xml:lang="ru">
     <subject>МОДЕЛИРОВАНИЕ В БИОФИЗИКЕ И БИОИНФОРМАТИКА</subject>
    </subj-group>
    <subj-group subj-group-type="toc-heading" xml:lang="en">
     <subject>MODELLING IN BIOPHYCIS AND BIOINFORMATISC</subject>
    </subj-group>
    <subj-group>
     <subject>МОДЕЛИРОВАНИЕ В БИОФИЗИКЕ И БИОИНФОРМАТИКА</subject>
    </subj-group>
   </article-categories>
   <title-group>
    <article-title xml:lang="en">EXCITATIONS OF PYRONIN Y AND PYRONIN B DYES IN AQUEOUS SOLUTION: COMPARATIVE THEORETICAL ANALYSIS</article-title>
    <trans-title-group xml:lang="ru">
     <trans-title>ВОЗБУЖДЕНИЕ КРАСИТЕЛЕЙ ПИРОНИНА Y И ПИРОНИНА В В ВОДНОМ РАСТВОРЕ: СРАВНИТЕЛЬНЫЙ ТЕОРЕТИЧЕСКИЙ АНАЛИЗ</trans-title>
    </trans-title-group>
   </title-group>
   <contrib-group content-type="authors">
    <contrib contrib-type="author">
     <name-alternatives>
      <name xml:lang="ru">
       <surname>Леонтьева</surname>
       <given-names>С. В.</given-names>
      </name>
      <name xml:lang="en">
       <surname>Leontieva</surname>
       <given-names>S. V.</given-names>
      </name>
     </name-alternatives>
     <email>tezidi@gmail.com</email>
     <xref ref-type="aff" rid="aff-1"/>
     <xref ref-type="aff" rid="aff-2"/>
    </contrib>
   </contrib-group>
   <aff-alternatives id="aff-1">
    <aff>
     <institution xml:lang="ru">Черноморское высшее военно-морское ордена Красной Звезды училище имени П.С. Нахимова</institution>
     <city>Севастополь</city>
     <country>Россия</country>
    </aff>
    <aff>
     <institution xml:lang="en">Black Sea Higher Naval Orders of the Red Star School named after P.S. Nakhimov</institution>
     <city>Sevastopol</city>
     <country>Russian Federation</country>
    </aff>
   </aff-alternatives>
   <aff-alternatives id="aff-2">
    <aff>
     <institution xml:lang="ru">Севастопольский государственный университет</institution>
     <city>Севастополь</city>
     <country>Россия</country>
    </aff>
    <aff>
     <institution xml:lang="en">Sevastopol State University</institution>
     <city>Sevastopol</city>
     <country>Russian Federation</country>
    </aff>
   </aff-alternatives>
   <pub-date publication-format="print" date-type="pub" iso-8601-date="2024-05-27T09:21:53+03:00">
    <day>27</day>
    <month>05</month>
    <year>2024</year>
   </pub-date>
   <pub-date publication-format="electronic" date-type="pub" iso-8601-date="2024-05-27T09:21:53+03:00">
    <day>27</day>
    <month>05</month>
    <year>2024</year>
   </pub-date>
   <volume>8</volume>
   <issue>3</issue>
   <fpage>301</fpage>
   <lpage>311</lpage>
   <history>
    <date date-type="received" iso-8601-date="2023-07-28T00:00:00+03:00">
     <day>28</day>
     <month>07</month>
     <year>2023</year>
    </date>
   </history>
   <self-uri xlink:href="https://rusjbpc.ru/en/nauka/article/83368/view">https://rusjbpc.ru/en/nauka/article/83368/view</self-uri>
   <abstract xml:lang="ru">
    <p>Чтобы выяснить влияние боковых групп на возбуждение ксантеновых красителей, пиронин Y (PY) и пиронин B (PB) были изучены методом DFT/TD-DFT. Результаты расчетов сравнивались между собой, а также с данными ранее исследованного красителя акридинового красного. Уровень теории O3LYP/6-31++G(d,p)/IEFPCM хорошо воспроизводил экспериментальные спектры водных растворов PY и PB. Согласно расчетам, коротковолновые плечи этих спектров обусловлены вибронными переходами. Боковые группы существенно влияют на набор вибронных переходов. Фотовозбуждение существенно изменяет интенсивность ИК-колебаний. Боковые группы этих ксантеновых красителей (аминодиметил/аминодиэтил) сильно влияют на колебания их хромофоров. HOMO покрывают боковые группы обоих красителей в большей степени, чем LUМО. Конфигурации обеих граничных орбиталей вокруг хромофоров идентичны для PY и PB. Дипольный момент молекул красителя в возбужденном состоянии оказался больше, чем в основном состоянии. В основном состоянии дипольный момент PB в 2,5 раза больше, чем у PY, а в возбужденных состояниях – в 1,7 раза меньше. Моменты перехода PY и PB практически идентичны друг другу. Проведен учет сайт-специфических взаимодействий растворенное вещество-растворитель в виде явного отнесения молекул воды, образующих прочные водородные связи с катионами красителей.</p>
   </abstract>
   <trans-abstract xml:lang="en">
    <p>To elucidate the effect of side groups on the excitation of xanthene dyes, pyronin Y (PY) and pyronin B (PB) were studied by DFT/TD-DFT. The calculation results were compared with each other, as well as with the data for the acridine red dye previously studied. The O3LYP/6-31++G(d,p)/IEFPCM theory level reproduced well the experimental spectra of PY and PB aqueous solutions. According to calculations, the short-wavelength shoulders of these spectra are caused by vibronic transitions. The side groups significantly affect the set of vibronic transitions. The photoexcitation significantly changes the intensities of IR vibrations. The side groups of these xanthene dyes (aminodimethyl/aminodiethyl) strongly influence the vibrations of their chromophores. HOMOs cover the side groups of both dyes to a greater extent compared to LUMOs. The configurations of both frontier orbitals around the chromophores are identical for PY and PB. The dipole moment of the dye molecules in the excited state turned out to be greater than in the ground state. In the ground state, the dipole moment of the PB is 2.5 times greater than that of the PY, and in the excited states, it is  1.7 times less. The transition moments of PY and PB are almost identical to each other. Considering site-specific solute-solvent interactions in the form of an explicit assignment of water molecules that form strong hydrogen bonds with the dye cations was performed.</p>
   </trans-abstract>
   <kwd-group xml:lang="ru">
    <kwd>TD-DFT</kwd>
    <kwd>вибронные переходы</kwd>
    <kwd>водный раствор</kwd>
    <kwd>пиронин Y</kwd>
    <kwd>пиронин Б</kwd>
    <kwd>спектр поглощения</kwd>
   </kwd-group>
   <kwd-group xml:lang="en">
    <kwd>TD-DFT</kwd>
    <kwd>vibronic transitions</kwd>
    <kwd>aqueous solution</kwd>
    <kwd>pyronin Y</kwd>
    <kwd>pyronin B</kwd>
    <kwd>absorption spectrum</kwd>
   </kwd-group>
  </article-meta>
 </front>
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  <p></p>
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