INVESTIGATION OF THE COMPLEX OF BACTERIAL RIBOSOMAL PROTEIN L1 FROM THERMOTOGA MARITIMA WITH SPECIFIC FRAGMENT MRNA
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Abstract (English):
The ribosomal protein L1 of the Escherichia coli is the regulator of its own L11 operon. The L1 protein binds to the specific site of its own mRNA and repress the translation if there is a deficiency of ribosomal 23S RNA. Regulatory properties of the L1 protein in other bacteria have been poorly studied. This paper examines the affinity of the ribosomal protein L1 from Thermatoga maritima to the specific fragment of mRNA. Analysis of the L11 operon sequences of T. maritima showed that the potential L1 protein binding site is located in the leader sequence of the mRNA of the L11 protein, as in E. coli . Previously, we have shown that the regulatory properties of the whole L1 protein can have its domain I. By the method of microscale thermophoresis we determined the kinetic constants of the interaction of the protein L1 T. maritima (TmaL1) and its domain I (TmaL1Id) with the fragment of the T. maritima mRNA. It is shown that TmaL1 and TmaL1dI specifically interact with the fragment of mRNA, that may suggests the conservative regulatory properties of both the whole L1 protein and its domain I in bacteria.

Keywords:
ribosomal protein L1, Thermatoga maritima, regulation of translation, RNA-protein interactions, micro scale thermophoresis, dynamical light scattering
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References

1. Nomura M., Yates J.L., Dean D. and Post L.E. Feedback regulation of ribosomal protein gene expression in Escherichia coli: structural homology of ribosomal RNA and ribosomal protein mRNA. Proc. Natl Acad. Sci. USA, 1980, vol. 77, pp. 7084-7088.

2. Fu Y., Deiorio-Haggar K., Anthony J., Meyer M.M. Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gamma proteobacteria. Nucleic Acids Res., 2013, vol. 41, iss. 6, pp. 3491-3503.

3. Köhrer C, Mayer C, Neumair O, Gröbner P, Piendl W. Interaction of ribosomal L1 proteins from mesophilic and thermophilic Archaea and Bacteria with specific L1-binding sites on 23S rRNA and mRNA. Eur. J. Biochem., 1998, vol. 256, pp. 97-105.

4. Hanner M., Mayer C., Köhrer C., Golderer G., Gröbner P., Piendl W. Autogenous translational regulation of the ribosomal MvaL1 operon in the archaebacterium Methanococcus vannielii. J. Bacteriol. 1994, vol. 176, pp. 409-418.

5. Kraft A., Lutz C., Lingenhel A., Gröbner P., Piendl W. Control of ribosomal protein L1 synthesis in mesophilic and thermophilic archaea. Genetics., 1999, 152, pp. 1363-1372

6. Korepanov A.P., Kostareva O.S., Bazhenova M. V., Bubunenko M.G., Garber M.B., Tishchenko S. V. Studying the properties of domain I of the ribosomal protein L1: incorporation into ribosome and regulation of the L1 operon expression. Protein J., 2015, vol. 34, iss. 2, pp. 103-110.

7. Mihaylina A.O., Kostareva O.S., Nikonova E.Yu., Tischenko S.V. Analiz vzaimodeystviya domena I arheynogo ribosomnogo belka L1 so specificheskimi fragmentami RNK. Aktual'nye voprosy biologicheskoy fiziki i himii, 2016, t. 1, vyp. 1, s. 239-243. [Mikhaylina A.O., Kostareva O.S., Nikonova E.Y., Tishchenko S.V. Analysis of the domain I of Archaeal ribosomal protein L1 interaction with specific RNA fragments. Topical issues of biological physics and chemistry, 2016, vol. 1, iss. 1, pp. 239-243 (In Russ.)]

8. Wienken, C.J., Baaske, P., Rothbauer, U., Braun, D., Duhr, S. Protein-binding assays in biological liquids using microscale thermophoresis. Nat Commun., 2010, vol. 1, p. 100.

9. Mihaylina A.O., Kostareva O.S., Nikonova E.Yu., Garber M.B., Tischenko S.V. Identifikaciya uchastkov na mRNK Thermus thermophilus i Thermatoga maritima, s kotorymi vzaimodeystvuet ribosomnyy belok L1. Molekulyarnaya biologiya, 2018, t. 52, s. 1. [Mikhaylina A.O., Kostareva O.S., Nikonova E.Y., Garber M.B., Tishchenko S.V. Identification of the sites on mRNA of Thermus Thermophilus and Thermatoga maritima, which bind ribosomal protein L1. Molecular Biology, 2018, vol. 52, p. 1. (In Russ.)]

10. Nevskaya N., Tishchenko S., Gabdoulkhakov A., Nikonova E., Nikonov O., Nikulin A., Platonova O., Garber M., Nikonov S. and Piendl W. Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA. Nucleic Acid Res. 2005, vol. 33, iss. 2, pp. 478-85.

11. Tishchenko S., Kljashtorny V., Kostareva O., Nevskaya N., Nikulin A., Gulak P., Piendl W., Garber M., Nikonov S. Domain II of Thermus thermophilus ribosomal protein L1 hinders recognition of its mRNA. J Mol Biol. 2008, vol. 383, pp. 301-305.

12. Nevskaya N., Tishchenko S., Volchkov S., Kljastorny V., Nikonova E., Nikonov O., Nikulin A., Kohrer C., Piendl W., Zimmermann R., Stockley P., Garber M. and Nikonov S. New insights into the interaction of ribosomal protein L1 with RNA. J. Mol. Biol., 2006, vol. 355, iss. 4, pp. 747-759.


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