IN SILICO SEARCH FOR TRANSMEMBRANE DOMAIN DIMERIC STATES OF INSULIN RECEPTOR FAMILY PROTEINS
Abstract and keywords
Abstract (English):
Insulin receptor family refers to receptor tyrosine kinases and consists of three proteins: insulin receptor (IR), type-1 insulin-like growth factor receptor (IGF-1R) and insulin receptor-related receptor (IRR). These proteins are important research objects due to interruptions of normal signaling may result to pathological conditions and developmental disabilities. Studies of these receptors activation dynamics is difficult due to necessary consideration of membrane environment for their correct organization and functioning. Nowadays there is no global theory about the activation mechanism of this family tyrosine kinases but importance of transmembrane (TM) domain dimerization in activation process was suggested. In this study we elaborated molecular models of TM domain dimers of IR, IGF-1R, IRR, and structural properties of these models were analyzed in silico. The resulting models can be used for study the role of membrane environment and point mutations on dimers stability and therefore receptor’s activity.

Keywords:
insulin receptor, transmembrane domain, molecular dynamics, alpha-helices interaction
Text
Publication text (PDF): Read Download
References

1. Saltiel A.R., Kahn C.R. Insulin signalling and the regulation of glucose and lipid metabolism. Nature, vol. 414, no. 6865, pp. 799-806.

2. Frasca F., Pandini G., Sciacca L., Pezzino V., Squatrito S., Belfiore A., Vigneri R. The role of insulin receptors and IGF-I receptors in cancer and other diseases. Arch. Physiol. Biochem., vol. 114, no. 1, pp. 23-37.

3. Schiöth H.B., Craft S., Brooks S.J., Frey W.H., Benedict C. Brain insulin signaling and Alzheimer’s disease: current evidence and future directions. Mol. Neurobiol., vol. 46, no. 1, pp. 4-10.

4. Smith B.J., Huang K., Kong G., Chan S.J., Nakagawa S., Menting J.G., Hu S.-Q., Whittaker J., Steiner D.F., Katsoyannis P.G., Ward C.W., Weiss M.A., Lawrence M.C. Structural resolution of a tandem hormone-binding element in the insulin receptor and its implications for design of peptide agonists. Proc. Natl. Acad. Sci. U.S.A., vol. 107, no. 15, pp. 6771-6776.

5. Cabail M.Z., Li S., Lemmon E., Bowen M.E., Hubbard S.R., Miller W.T. The insulin and IGF1 receptor kinase domains are functional dimers in the activated state. Nat. Commun., 2015, vol. 6, pp. 6406.

6. Hernández-Sánchez C., Mansilla A., de Pablo F., Zardoya R. Evolution of the Insulin Receptor Family and Receptor Isoform Expression in Vertebrates. Mol. Biol. Evol., 2008, vol. 25, no. 6, pp. 1043-1053.

7. Tatulian S.A. Structural Dynamics of Insulin Receptor and Transmembrane Signaling. Biochemistry, 2015, vol. 54, no. 36, pp. 5523-5532.

8. Lee J., Miyazaki M., Romeo G.R., Shoelson S.E. Insulin Receptor Activation with Transmembrane Domain Ligands. J. Biol. Chem., 2014, vol. 289, no. 28, pp. 19769-19777.

9. Kavran J.M., McCabe J.M., Byrne P.O., Connacher M.K., Wang Z., Ramek A., Sarabipour S., Shan Y., Shaw D.E., Hristova K., Cole P.A., Leahy D.J. How IGF-1 activates its receptor. eLife, 2014, vol. 3.

10. Menting J.G., Whittaker J., Margetts M.B., Whittaker L.J., Kong G.K.-W., Smith B.J., Watson C.J., Žáková L., Kletvíková E., Jiráček J., Chan S.J., Steiner D.F., Dodson G.G., Brzozowski A.M., Weiss M.A., Ward C.W., Lawrence M.C. How insulin engages its primary binding site on the insulin receptor. Nature, 2013, vol. 493, no. 7431, pp. 241-245.

11. Polyansky A.A., Chugunov A.O., Volynsky P.E., Krylov N.A., Nolde D.E., Efremov R.G. PREDDIMER: a web server for prediction of transmembrane helical dimers. Bioinformatics, 2014, vol. 30, no. 6, pp. 889-890.

12. Van Der Spoel D., Lindahl E., Hess B., Groenhof G., Mark A.E., Berendsen H.J.C. GROMACS: fast, flexible, and free. J. Comput. Chem., 2005, vol. 26, no. 16, pp. 1701-1718.


Login or Create
* Forgot password?