BIOPHYSICAL ECOLOGY FROM THE VIEW OF THE CONCEPT OF SUPRAMOLECULAR CHEMISTRY
Abstract and keywords
Abstract (English):
For the first time, the dynamics of supramolecular topologically associated ensembles (Hn-nucleoplasms, Chr-I-chromatin loosely and Chr-II tightly bound to the nuclear matrix and the NM itself) is examined, on the interface of which a super molecular reorganization of the non-histone and histone proteomes with an interphase-heteropolymeric chromatin matrix is presented, whose important for understanding the characteristics of biochemical processes in the transition from heterotrophic to autotrophic plant development. The data presented may be of interest to biophysicists and those who are engaged in the development of logical-mathematical schemes of the theory and practice of biological specificity and may be included in the ontology database of the stages of growth and development of karyogenomic plants.

Keywords:
Proteomics, Interphase nuclear topology, Supramolecular biochemistry, Karyogenomics, wheat, signaling systems
Text
Publication text (PDF): Read Download
References

1. Barlou P.U. Delenie kletok v meristemah i znachenie etogo processa dlya organogeneza i formoobrazovaniya rasteniy. Ontogenez, 1994, № 25 (5), s. 5-38. @@[Barlou P.U. Cell division in meristems and the importance of this process for plant organogenesis and morphogenesis. Ontouenez, 1994, vol. 25 (5), pp. 5-38. (In Russ.)]

2. Gladyshev G.P. Myslenno zaglyanul v kosmos. Nauka v Rossii, 1993, t. (3/4), s. 14-19. @@[Gladichov G.P. Mentally looked into space. Science in Russia, 1993, vol. (3/4), pp. 14-19. (In Russ.)]

3. Gel'fand M.S. Evolyuciya regulyatornyh sistem. Materialy dokladov V s'ezda biofizikov Rossii. Rostov -na-Donu: Izdatel'stvo Yuzhnogo federal'nogo universiteta, 2015, t. 1, s. 19. @@[Gelfand M.C. The evolution of regulatory systems. Materials of reports of the V Congress of Biophysicists of Russia. Rostov-on-Don: Publishing House of the Southern Federal University, 2015, vol. 1, p. 19. (In Russ.)]

4. Ivanova E.A. Osobennosti «strukturirovannyh processov» v interfaznyh yadrah u pshenicy, vyvedennoy v usloviyah holodovogo stressa. Ekobioteh, 2019, t. 2 (4), s. 1-6. @@[Ivanova E.A. Features of “structured processes” in interphase nuclei in wheat, bred under conditions of cold stress. Ecobiotech, 2019, vol. 2 (4), pp. 1-6, DOI:https://doi.org/10.31163/2618-964X-2019-2-4-000-000 (In Russ.)]

5. Ivanova E.A., Ahmetov R.R. Modifikaciya negistonovyh belkov v prorostkah rasteniy. Fiziologiya rasteniy, 1987, t. 34 (3), s. 507-512. @@[Ivanova E.A., Akhmetov R.R. Modification of non-histon proteins in plant seedlings. Physiology plant, 1987, vol. 34 (3), pp. 507-512. (In Russ.)]

6. Ivanova E.A., Vafina G.H. Antioksidantnaya aktivnost' peroksidaznoy sistemy nadmolekulyarnyh struktur kletochnyh yader v postembrional'noy faze ontogeneza pshenicy. Vesti nacional'noy akademii nauk Belarusi, seriya biologicheskih nauk, 1999, t. 2, s. 25-29. @@[Ivanova E.A., Vafina G.Ch. Antioxidant activity of the peroxidase system of the supramolecular structures of cell nuclei in the postembryonic phase of ontogenesis of wheat. Vesti nacional'noj akademii nauk Belarusi, seriya biologicheskih nauk, 1999, vol. 2, pp. 25-29. (In Russ.)]

7. Ivanova E.A., Vafina G.H. Analiz nadmolekulyarnyh struktur kletochnogo yadra pri aktivacii hromatina. Doklady Akademii Nauk, 2006, t. 406(3), s. 419-421. @@[Ivanova E.A., Vafina G.Ch. Analysis of supramolecular structures of the cell nucleus upon chromatin activation. Reports of the Academy of Sciences, 2006, vol. 406(3), pp. 419-421. (In Russ.)]

8. Ivanova E.A., Vafina G.H., Ivanov R.S. Analiz lokalizacii proteazochuvstvitel'nyh saytov Arg-H v dinamike suprastruktur interfaznogo hromatina pri indukcii rostovogo morfogeneza zrelyh zarodyshey yarovoy i ozimoy pshenicy. Fiziologiya i genetika, 2014, t. 46 (3), c. 202-211. @@[Ivanova E.A., Vafina G.Ch., Ivanov R.C. Analysis of the localization of protease-sensitive sites of Arg-X in the dynamics of interphase chromatin suprastructures during the induction of growth morphogenesis of mature embryos of spring and winter wheat. Physiology and Genetics, 2014, vol. 46 (3), pp. 202-211. (In Russ.)]

9. Ivanova E.A., Vafina G.H., Yamaleev A.M. Issledovanie funkcional'noy aktivnosti kletochnyh yader pri patogeneze pshenicy. Mikologiya i fitopatologiya, 1989, t. 23 (2), s. 141-146. @@[Ivanova E.A., Vafina G.Ch., Ymaleev A.M. The study of the functional activity of cell nuclei in the pathogenesis of wheat. Mycology and phytopathology, vol. 23 (2), pp. 141-146. (In Russ.)]

10. Ivanova E.A., Gilyazetdinov Sh.Ya., Ahmetov R.R. Modifikaciya gistonov rasteniy i vliyanie fitogormonov na intensivnost' etogo processa. Rastitel'nye belki i ih biosintez. M.: Nauka, 1975, c. 301-305. @@[Ivanova E.A., Gilyzitdinov Ch.Y., Akhmetov R.R. Modification of plant histones and the effect of phytohormones on the intensity of this process. Plant proteins and their biosynthesis. M.: Science, 1975, pp. 301-305. (In Russ.)]

11. Kolesnikova T.D. Mehanizmy prostranstvenno-vremennoy regulyacii replikacii. Molekulyarnaya biologiya, 2013, t. 47 (1), s. 12-37. @@[Kolesnicova T.D. Mechanisms of spatio-temporal regulation of replication. Molecular biology, 2013, vol. 47 (1), pp. 12-37. (In Russ.)]

12. Konarev V.G. Citohimiya i gistohimiya rasteniy. M.: Vysshaya shkola, 1966. @@[Konarev V.G. Cytochemistry and histochemistry of plants. Israel program for scientific translation, Jerusalem, 1972].

13. Konarev V.G. Morfogenez rasteniy i molekulyarno-biologicheskiy analiz. Sankt-Peterburg: RASHN, VIR im. N.I. Vavilova, 1998, 370 s. @@[Konarev V.G. Morphogenesis and molecular-biological analysis of plants. Sanct Peterburg, VIR, 1998, 370 p. (In Russ.)]

14. Len Zh.-M. Supramolekulyarnaya himiya. Novosibirsk: Nauka, 1998, 333 s. @@[Lehn J.-M. Supramolecular chemistry. Novosibirsk: Science, 1998, 333 p. (In Russ.)]

15. Razin S.V. Strukturno-funkcional'naya organizaciya kletochnogo yadra i regulyaciya transkripcii: vvodnye zamechaniya k special'nomu vypusku zhurnala. Biohimiya, 2018, t. 83, s. 437-439. @@[Razin C.V. Structural and functional organization of the cell nucleus and regulation of transcription: introductory notes to the special issue of the journal. Biochemistry, 2018, vol. 83, pp. 437-439. (In Russ.)]

16. Razin S.V, Gavrilov A.A. Strukturno-funkcional'nye domeny eukarioticheskogo genoma. Biohimiya, 2018, t. 83, s. 440-451. @@[Razin C.V., Gavrilov A.A. Structurally functional domains of the eukaryotic genome. Biochemistry, 2018, vol. 83, pp. 440-451. (In Russ.)]

17. Razin S.V., Gavrilov A.A., Kos P., Ul'yanov S.V. Samoorganizaciya hromatinovoy fibrilly v topologicheski-associirovannye domeny. Bioorganicheskaya himiya, 2017, t. 43 (2), s. 115-123. @@[Razin C.V., Gavrilov A.A., Koc P., Ulyanov C.V. Self-organization of chromatin fibrils into topologically associated domains. Bioorganic chemistry, 2017, vol. 43 (2), pp. 115-123. (In Russ.)]

18. Stid Dzh. V., Etvud Dzh., L. Supramolekulyarnaya himiya (supramolekulyarnaya biohimiya). M.: IKC «Akademkniga», 2007, t. 2, 416 s. @@[Stid D.V., Etvud D.L. Supramolecular chemistry (supramolecular biochemistry). M.: IKC, Academic book, 2007, vol. 2, 416 p. (In Russ.)]

19. Tom R. Strukturnaya ustoychivost' i morfogenez. M.: Logos, 2002, 280 s. @@[Tom R. Structural Stability and Morphogenesis. M.: Logos, 2002, 280 p. (In Russ.)]

20. Finkel'shteyn A.V., Pticin O.B. Fizika belka. Moskva: Knizhnyy dom, 2005, 460 s. @@[Finkelstein A.V., Ptitsin O.B. Physics of protein. Moscow: Book house, 2005, 460 p. (In Russ.)]

21. Shabarina A.N., Glazkov M.V. Bar'ernye elementy hromatinovyh domenov i yadernaya obolochka. Genetika, 2013, t. 49 (1), s. 30-36. @@[Shabarina A.N., Glazkov M.V. Barrier elements of chromatin domains and nuclear envelope. Genetics, 2013, vol. 49 (1), pp. 30-36. (In Russ.)]

22. Shaytan K.V. Fundamental'nye zakonomernosti formirovaniya prostranstvennyh struktur konformacionno podvizhnyh molekul. Sbornik nauchnyh trudov VI s'ezda biofizikov Rossii. Sochi: Kubanskiy gosudarstvennyy universitet, 2019, t. 1, c. 36. @@[Shaitan K.V. The fundamental laws of the formation of spatial structures of conformationally mobile molecules. Collection of scientific papers of the VI Congress of Biophysicists of Russia. Sochi: Kuban State University, 2019, vol. 1, p. 36. (In Russ.)]

23. Ivanova E.A. Arg-H proteo-processing as model system for organization of karyogenomics Interphase chromatin of mature germs of wheats, formed in the conditions of cold stress. Journal of Stress Physiology & Biochemistry, 2017, vol. 13 (4), pp. 65-73. (In Russ.)

24. Ivanova E.A. Anterograde to adjusting, as system organization to localization of Arg-X of, proteo-processing in the topological associated ensembles of karyogenomics suprastructure interphase nucleus, at induction of growth morphogenesis of mature germs of wheat. Journal of applied microbiology and biochemistry, 2018, vol. 2 (1:4).

25. Ivanova E.A. On the question of epigenetic mechanisms of kariogenomic winter wheat in the concept of supramolecular biochemistry. Journal of Stress Physiology & Biochemistry, 2019, vol. 15 (3), pp. 14-20. (In Russ.).

26. Ivanova E.A., Vafina G.H., Ivanov R.S. Initial morphogenetic features of proteome of suprastructures of interphase chromatin for germination of mature germs in conditions of adapting to winter in wheat. Journal of stress physiology and biochemistry, 2015, vol. 11 (4), pp. 29-42. (In Russ.)

27. Schubert I., Shaw P. Organization and dynamics of plant interphase chromosomes. Trends in plant science, 2011, vol. 16 (5), pp. 273-281.

28. Smith K.L., De Lange R.J., Bonner J. Chemistry and biology of the histones. Physiol. Revs., 1970, vol. 50 (2), pp. 159-170.

29. Spicer S. High-mobility group chromosomal proteins of wheat. The journal of biological chemistry, 1984, vol. 259 (19), pp. 12007-12013.

30. Tropberger P., Schneider R. Scratching the (lateral) surface of chromatin regulation by histone modifications. Nature structural and molecular biology, 2013, vol. 20 (6).


Login or Create
* Forgot password?